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Ensembl Mouse is based on the NCBI m36 mouse assembly (April 2006, strain C57BL/6J).
The Mouse Genome Sequencing Consortium is a joint project between
The Whitehead Institute/MIT Center for Genome Research,
The Washington University Genome Sequencing Center,
The Wellcome Trust Sanger Institute
and EMBL - EBI to provide the Mouse genome sequence to the world.
We work closely with other Mouse groups to provide an integrated resource (see below for credits).
This site provides a full Ensembl gene build for the above assembly. There are some major changes in the assembly; for more details see the NCBI build statistics .
Modifications to the systems have further improved the gene set. 96% of the known genes and 60% of the novel genes from build m35 retain the same Ensembl gene ids in this release.
The xref system has been changed so that XM/XP-derived EntrezGenes are not used for display names.
Read more...
The following changes have been made to the Ensembl API.
Read more...
| Assembly: | NCBI m36, Dec 2005 |
| Genebuild: | Ensembl, Apr 2006 |
| Database version: | 46.36g |
| Known genes: | 21,946 |
| Novel genes: | 2,172 |
| Pseudogenes: | 1,350 |
| RNA genes: | 2,783 |
| Immunoglobulin/T-cell receptor gene segments: | 480 |
| Genscan gene predictions: | 71,259 |
| Gene exons: | 232,568 |
| Gene transcripts: | 33,074 |
| SNPs: | 12,266,776 |
| Base Pairs*: | 3,377,887,556 |
| Golden Path Length**: | 2,661,205,088 |
| Most common InterPro domains: | Top 40 Top 500 |
* Total number of base pairs = sum of lengths of DNA table
** Reference assembly (Golden path) length = sum of non-redundant top level seq regions
© 2008 WTSI / EBI. Ensembl is available to download for public use - please see the code licence for details.
